miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|18224857|gb|AV929060.1|AV929060 CCTGGGAACTGGGGATAGACTCTAGGTTTTGGCTTTGCCGGCACCGGCAAATAATGTACTGCCGCCACTTACAGTATGCT
CCCTCCGTCTCAAAATAAGTGTCTCAGCTTTATACTAGTTTTAGTGTAAAGTTATACTAAGCTTGAAACATTTATTTTGA
GGCGGAGCGAGTATTAATCATGCACAGAAAATAAATTACATAGAGAGATAGCTATATTATATACACCACCGGACAAACTT
CAGGCGACGGTCTACCCAATACTTGTGATTCCGTTTTTCTCCCCCCTTCTTCCAGCTGCCATCATTTTCCCCAGCACCTT
GTTTCATTCACAAGCAATCTTGGTATCAAAACTGCTTAGACATATTGCAAATGATTGAAATGCTGATATCGGGTAGCGGT
AGTCCATGGTGAACAAGTCTTTGCCTATCTTTCCAAACTGGAGAATCACCTTGTCATGCTCCTGGCTAACTGGTCCATTG
TCATCTGAAGCCACCAGCTGAAAGTTCTTCACTGACGCAACCGTCACCCGCCCACGGAAATTGAGGCACCAACATTGCAG
TTGTTCATGCCACCGAGGAGACTTGTTCTTCAGCACC




Most similar to sp|Q10LG8|TLP6_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q10LG8|TLP6_ORYSJ Tubby-like F-box protein 6 OS=Oryza sativa
           subsp. japonica GN=TULP6 PE=2 SV=1
          Length = 403

 Score =  183 bits (464), Expect = 8e-46
 Identities = 86/90 (95%), Positives = 88/90 (97%)
 Frame = -2

Query: 596 VLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVASDDNGPVSQEHDKVILQFGKIGKD 417
           VLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVASD+NGP +QE DKVILQFGKIGKD
Sbjct: 314 VLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVASDENGPTNQEQDKVILQFGKIGKD 373

Query: 416 LFTMDYRYPISAFQSFAICLSSFDTKIACE 327
           LFTMDYRYPISAFQSFAICLSSFDTKIACE
Sbjct: 374 LFTMDYRYPISAFQSFAICLSSFDTKIACE 403